Cytonaut Single-Cell Software | Single Cell Analysis for RNA-seq

A standalone software solution to analyze your single-cell dataset

The Cytonaut™ Cloud Software covers the entire single-cell analysis workflow, from processing raw sequencing data and controlling sequence quality to providing count matrices and sample quality indicators, as well as post-processing results including differential gene expression and interactive data visualization.

Entirely cloud-based from start to finish

The computational power is fully shouldered by our servers, bypassing the need to install software and use your own computational resources. Trust your sequencing data and your analysis thanks to a robust quality control process and checkpoints.

Make the most out of your single-cell dataset

With Cytonaut™ Software you can also generate publication-grade single-cell data visualizations. Confidently identify clusters and sub-clusters of cell subtypes in your sample, analyze your differential gene expression, and support your data interpretation further with trajectory analysis.

Test the software today!

By creating a free account, you will be able to go through the entire process and play with the currently available features using PBMC and NIH/HEK datasets.

Fast to handle the data!

"Cytonaut™ is quite fast to handle the data, it can analyze a large set of genes at the same time thanks to a heatmap, and features subselecting cells of interest." "From the point of view of a beginner : it is quite easy, it offers nice features and a good aesthetic."

Alexandrine Liboz

Centre de Recherche Saint-Antoine (CRSA) Sorbonne Université, Paris, France

Intuitive and easy to use!

"I had the opportunity to test the Cytonaut™ software. It is intuitive and easy to use. The user's guide is very well constructed and allows for guidance at each stage of the analysis."

Marine MERANDET, PhD

Human Immunology Pathophysiology Immunotherapy team, Inserm Saint Louis, Paris, France

Intuitive and functional!

Intuitive and functional: The Cytonaut™ software is very intuitive and easy to use. The navigation is natural and the concise user guide allows you to progress in the analysis and to quickly take in hand all the functionalities of the software.

Chloe Grolleau

Human Immunology Pathophysiology Immunotherapy team, Inserm Saint Louis, Paris, France

Generate high-quality single-cell data with the Asteria™ scRNA-seq kit

Download technical brochure

Learn all the details and check validation data about our single-cell RNA-seq solution below

Cytonaut™

Single-Cell Analysis Software

Cytonaut™ software